What are hierarchies
Hierarchies are nested groupings.
Examples of hierarchies
Levels of organization in our bodies:
Organism: Organ Systems: Organs: Tissues: Cells: Organelles
Ecology:
Biome: Community: Population: Organism
Political boundaries:
USA: California: Orange County: Fullerton
Notice how each group is completely subordinate to any group on its left.
Political boundaries happen to be arranged hierarchically, but can you imagine a situation in which they are not? For example, what if part of Orange County was outside of California?
Is this a hierarchy?
Red Cars: American Cars: Vehicles with 4 wheels
Nature is hierarchical
A comparison of an organism with its nearest to more distant relatives will reveal that attributes of organisms are nested in hierarchical patterns. Organisms resemble their closest relatives more than distant relatives.
Vertebrata; Tetrapoda; Amniota; Mammalia; Eutheria; Homo sapiens
[or more completely: Eukaryotae; Metazoa;
Eumetazoa; Bilateria; Coelomata;
Deuterostomia; Chordata; Vertebrata; Gnathostomata;
Osteichthyes;
Sarcopterygii; Choanata; Tetrapoda; Amniota;
Mammalia; Theria;
Eutheria; Archonta; Primates; Catarrhini;
Hominidae; Homo; sapiens]
We recognize that both humans and mice belong to Eutheria
(placental mammals) because, like other members of
Eutheria, they have placental nourishment of their
developing embryos. In other words, we hypothesize
that this similarity is due to common ancestry. Humans
and mice share a common mammalian ancestor (the ancestor
of Eutheria) and this ancestor had a placenta. If
this were not so then we would have to postulate that
placental nourishment evolved independently in lineages
leading to humans and mice.
Clades
A clade is a grouping of organisms that includes an
ancestor and all of its descendents. Eutheria is the
clade that includes the eutherian ancestor and all its
descendents (including humans and mice).
Clades are real historical "individuals" in the
sense that they have a birth, the change throughout life,
and eventually they die. Birds would be birds even if
we did not call them such. We recognize
clades by their shared evolutionary novelties, such
as the placenta in all eutherians, or feathers
in all birds.
Siblings
Eutheria has a "sibling" (or "sister")
clade called Metatheria (marsupial mammals). Kangaroos
and opossums belong to Metatheria. They nourish their
newborns with a marsupium, not a placenta. Again we
hypothesize that the common ancestor for Metatheria
had a marsupium.
Children
Eutheria also has "children" clades. Primates
and rodents are two of the children of Eutheria. Likewise,
Eutheria and Metatheria are children of Mammalia.
Lineages are hierarchical
Siblings Eutheria and Metatheria are each subgroups of more inclusive groupings such as Mammalia, the common ancester of which is believed to have had fur and mammory glands. Likewise, Mammalia
is a subgroup of Amniota, whose ancestor had an amnion,
is a subgroup of Tetrapoda, whose ancestor had four limbs,
is a subgroup of Vertebrata, whose ancestor had vertebrae,
and so on.
In the left column below is the entire detailed lineage for Eutheria and to the right are siblings and children of Eutheria.
Why does nature produce hierarchical groups?
Evolution generally results in lineage splitting. The human lineage is forever separated from the mouse lineage because each has evolved for many millions of years along separate paths. If separated lineages could commonly fuse back together again to form a single lineage, then we would not expect patterns of similarities that are hierarchical.
Languages are mostly hierarchical. French, Italian, and Spanish words can usually be traced back to a root word in a presumed common ancestral language. However, melding together of long separate languages can also occur. When the Romans invaded England, the necessity to communicate with each other had lasting impacts on each language. This phenomenon complicates the historical reconstruction of word origins. Judging from the neat hierarchical arrangement of similarities in organims, it is likely that such fusion is rare in lineages of organisms.
Consider an analogy to a maple tree. When two twigs first split on the tree, they may later go on to become "sibling" branches or trunks. Humans and mice are separated twigs on the same major branch (Eutheria). Kangaroos and opossums are twigs on a neighboring major branch (Metathuria). In this analogy, a clade is what falls would off after you cut through one of the branches (an ancestral twig and all of its descendents). This is known as the snip rule.
What is a cladogram?
A cladogram is a branching diagram that depicts a particular hypothesis of phylogenetic relationship. Ideally, it should correspond as closely as possible to the hierarchical classification system used, that is, one should use a phylogenetic classification system. Here is an example that is based on Animal WWW Links.
Here is the "indented classification" that corresponds to the figured cladogram
above, and is the same as the indentation pattern in
the Animal WWW Links.
Completing the following exercise should make you comfortable with the relationship between a cladogram and its corresponding phylogenetic classification. Part "a" of this exercise is to construct a cladogram from the following indented phylogenetic classification:
To complete this exercise, follow these steps:
Part "b" of the exercise is to draw a circle neatly around each clade in your diagram. Remember the snip rule (see above). The point of this is to emphasize that cladograms are a way to arrange clades as nested hierarchies.